dbSNP Human Build 146 Release

Дата публикации: 24-11-2015 23:00:00

​dbSNP human build 146 for both GRCh38.p2 and GRCh37.p13 assemblies is now available. organism:     Homo sapienstax_id:       9606common_name:  humanassembly:     GRCh38.p2 (GCF_000001405.28) and GRCh37p13 (GCF_000001405.25)total_ss_cnt: 538341120total_rs_cnt: 150482731new_ss_cnt:   32465411new_rs_cnt:   747354FTP:          ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606Entrez:       http://www.ncbi.nlm.nih.gov/snp/?term=txid9606 Release notes:============*  New submissions:http://1.usa.gov/1PMLG9H * New content:dbSNP RefSNP page now includes allele frequency from 1000 Genomes, ExAC, and GO-ESP along with HapMap and other submitted populations.Example: http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=693#Diversity Population descriptions for allele frequency data.-----------------------------------------------------------------1000 Genomes Super Population (http://www.1000genomes.org/category/frequently-asked-questions/population)EAS:   East Asia  EUR:  Europe    AFR:  Africa    AMR: America population  SAS:  South Asia   GO-ESP Cohort Populations (https://esp.gs.washington.edu/drupal/) ExAC Aggregated Populations (http://exac.broadinstitute.org/faq)  * FTP data by assembly:1. ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/- This directory has the most current build b146 dbSNP rs (mapped to GRCh38) ftp files. 2. ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh38p2- This directory has b146 dbSNP rs (mapped to GRCh38) ftp files.- This directory has exactly the same set of sub-directories and files as ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/.  (In Unix speak, "snp/organisms/human_9606" is symlinked to "snp/organisms/human_9606_b146_GRCh38p2") 3. ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh37p13- This directory has b146 dbSNP rs (mapped to GRCh37p13) ftp files- This directory has exactly the same set of sub-directories as human_9606/human_9606_b146_GRCh38p2.  Please email snp-admin@ncbi.nlm.nih.gov for any questions and comments.​

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